First off, bin the leaf springs. Leaf springs, rwd and 200hp plus will have a massive amount of wheel hop on a fast take off and will also probable twist the chassis/bed.
Id use and Audi 016 gearbox, chop off as much of the bellhousing as you want to clearance it under the rear bed, bolt a 944 torque tube to it, get a bellhousing off an 02A, tig weld a 15mm 6061 alloy plate to the rear of it, bolt that to the front end of torque tube, that will bolt to the 1.8T 058 or 06A block.
Hang the gear box under the bed on a simple 2 mount bracket. Use the Passat engine mounts to keep all the wind up torque the same from front to back. This way puts no stress through the already weak chassis, the torque tube will take 90% of it.
For the rear suspension you could bolt in a complete bmw rear subframe, or a 924/944 subframe only having just two handy mounting points at the front of wheel, two 8mm bolts(1 per side above wheel), and then you'll just have to mount the upper shock eyes.
The gear levers position can also be moved anywhere along the torque tube by adding to or cutting the single link bar to box.
The 016 gearbox is also fully independent then to any rear suspension subframe when fitted this way, great scope. All you need to is find the correct length drive shafts from X subframe hubs to your Audi box.
The gearbox and diff being in the rear will also help weight distribution an awful lot therefore making it handle better.
Putting the box in the rear will also mean you wont have to butcher the bulkhead as much.
The 016 box in all its glory>
The above is how Id do it. It will also end up being all VAG then also, and do away with the leaf springs, and would end up very drivable.
Its pretty straight forward too. And even more-so taking into account your qualifications.